prior_tau_dist=NULL of blrm_exnex.inc_warmup argument.as_draws_* functions to blrm_trial inputs.prior_tau_dist=NULL is forwarded when
used via blrm_trial to blrm_exnex.rvars are exported as arrays when the underyling
parameter is structured.sample_map argument for blrm_exnex function allows to sample
MAP prior for all defined strata of the model. When set to TRUE
the posterior draws contain map_log_beta and map_eta which
correspond to respective MAP priors per stratum for new trials.prior_tau_dist of blrm_exnex to be set to
NULL. This will disable the hierarchical model structure entirely
and this simplifies specifying such models without a hierarchical
structure (data will then be pooled across groups).blrm_exnex. These replace
the existing arguments for prior specification, which are now
deprecated and will be removed in the next main version increase of
the package.posterior draws format from blrmfit objects.plot_toxicity_intervals_stacked(), and
another leading to wrongly ordered facets in
plot_toxicity_intervals(). Ensured consistent bayesplot themeing
across all plots.cmdstan 2.36.0cmdstanr backend are now loaded using
the brms package instead of rstan. This fixes issues with loading
results from cmdstan 2.36.0summary() function using the interval_prob
argument by default now include the lower end as a closed interval for
calls where predictive = FALSE. For the default underdosing interval,
this includes the probability of exactly 0 now.OncoBayes2 will now report the date of the release
and the respective git commit hash used to create the sources of the
package.num()
formatted columns, which OncoBayes2 is not supporting)blrmfit objects for divergent
transitions or non-convergence of parametersnuts_params, rhat, log_posterior
and neff_ratio for blrmfit objects as defined in bayesplotpp_data by about 25% which is used in all posterior
summary functionsewoc_check summary routine for blrm_trial objects. The
returned summary contains MCMC diagnostics and accuracy estimates of
the EWOC metric as defined for the trial. This allows to assess the
MCMC estimation error for EWOC.blrm_trial objects are printed.save_warmup=FALSE.Switch SBC runs to use clustermq in lieu of batchtools. Also now use L'Ecuyer CMG as rng engine during SBC runs.
add critical_quantile function allowing to calculate critical doses which fulfill conditions like EWOC.